PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0248s0024.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YC
Protein Properties Length: 260aa    MW: 27736 Da    PI: 4.7457
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0248s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.46.8e-56601641102
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtd
  Cagra.0248s0024.1.p  60 QLQMFWTYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTD 149
                          89*****998899***************************************************************************** PP

                NF-YC  88 ifdflvdivprdelk 102
                          ifdflvdivpr+e+k
  Cagra.0248s0024.1.p 150 IFDFLVDIVPREEIK 164
                          ***********9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.22E-3448154IPR009072Histone-fold
PfamPF008081.9E-2082145IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.4E-3783160IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDNNNNNNNN QPPPPTSVYP PNSAVTTVIP PPPPGSTSII AGGGGGGATY HHLLQQQQQQ  60
LQMFWTYQRQ EIEQVNDFKN HQLPLARIKK IMKADEDVRM ISAEAPILFA KACELFILEL  120
TIRSWLHAEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR EEIKEEEDAA AAAAALGGGG  180
MVPQAASGVP YYYPPMGQPA VPGGMMIGRP AMDPSGVYAQ PPSQAWQSVW QNSAGGGGGD  240
DVSYGSGGSS GHGNLDSQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C6e-446116019119HapE
4g91_C6e-446116019119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0724020.0AY072402.1 Arabidopsis thaliana transcription factor Hap5a-like protein (At5g63470) mRNA, complete cds.
GenBankBT0002180.0BT000218.1 Arabidopsis thaliana transcription factor Hap5a-like protein (At5g63470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001032130.11e-143nuclear transcription factor Y subunit C-4
RefseqNP_201152.11e-143nuclear transcription factor Y subunit C-4
SwissprotQ9FMV51e-145NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLB9DG641e-143B9DG64_ARATH; AT5G63470 protein
STRINGAT5G63470.11e-143(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.21e-114nuclear factor Y, subunit C4